SMTL ID : 6nby.1

T.elongatus NDH (composite model)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.10 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain I: I.56, C.73, P.74, I.98, C.103, I.104, C.106, A.107, N.108, C.109 1 PLIP interactions: 1 interactions with chain I, Metal complexes: I:I.104 SF4.2: 12 residues within 4Å: Chain I: C.63, I.64, C.66, E.67, V.68, C.69, Y.112, C.113, P.114, T.115, C.117, L.118 0 PLIP interactions: SF4.3: 13 residues within 4Å: Chain H: R.49, R.69 Chain K: A.51, C.52, C.53, G.88, T.89, G.115, A.116, C.117, M.123, C.148, P.149 1 PLIP interactions: 1 interactions with chain K, Metal complexes: K:T.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laughlin, T.G. et al., Structure of the complex I-like molecule NDH of oxygenic photosynthesis. Nature (2019)

Release Date

2019-02-27

Peptides

NAD(P)H-quinone oxidoreductase subunit 1: A
NAD(P)H-quinone oxidoreductase subunit 2: B
NAD(P)H-quinone oxidoreductase subunit 3: C
NAD(P)H-quinone oxidoreductase chain 4 1: D
NAD(P)H-quinone oxidoreductase subunit 4L: E
NADH dehydrogenase subunit 5: F
NADH-quinone oxidoreductase subunit J: G
NAD(P)H-quinone oxidoreductase subunit H: H
NAD(P)H-quinone oxidoreductase subunit I: I
NAD(P)H-quinone oxidoreductase subunit J: J
NAD(P)H-quinone oxidoreductase subunit K: K
NAD(P)H-quinone oxidoreductase subunit L: L
NAD(P)H-quinone oxidoreductase subunit M: M
NAD(P)H-quinone oxidoreductase subunit N: N
NAD(P)H-quinone oxidoreductase subunit O: O
Proton-translocating NADH-quinone dehydrogenase subunit P NdhP: P
Proton-translocating NADH-quinone dehydrogenase subunit Q NdhQ: Q
Tlr0636 protein: R

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
S

Membrane

We predict this structure to be a membrane protein.
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NAD(P)H-quinone oxidoreductase subunit 1

NAD(P)H-quinone oxidoreductase subunit 2

NAD(P)H-quinone oxidoreductase subunit 3

NAD(P)H-quinone oxidoreductase chain 4 1

NAD(P)H-quinone oxidoreductase subunit 4L

NADH dehydrogenase subunit 5

NADH-quinone oxidoreductase subunit J

NAD(P)H-quinone oxidoreductase subunit H

NAD(P)H-quinone oxidoreductase subunit I

NAD(P)H-quinone oxidoreductase subunit J

NAD(P)H-quinone oxidoreductase subunit K

NAD(P)H-quinone oxidoreductase subunit L

NAD(P)H-quinone oxidoreductase subunit M

NAD(P)H-quinone oxidoreductase subunit N

NAD(P)H-quinone oxidoreductase subunit O

Proton-translocating NADH-quinone dehydrogenase subunit P NdhP

Proton-translocating NADH-quinone dehydrogenase subunit Q NdhQ

Tlr0636 protein

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