SMTL ID : 6nfh.1

BTK in complex with inhibitor 8-(2,3-dihydro-1H-inden-5-yl)-2-({4-[(2S)-3-(dimethylamino)-2-hydroxypropoxy]phenyl}amino)-5,8-dihydropteridine-6,7-dione

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x KLM: 8-(2,3-dihydro-1H-inden-5-yl)-2-({4-[(2S)-3-(dimethylamino)-2-hydroxypropoxy]phenyl}amino)-5,8-dihydropteridine-6,7-dione(Non-covalent)

KLM.1: 14 residues within 4Å: Chain A: L.20, G.21, T.22, V.28, A.40, K.42, T.86, E.87, Y.88, M.89, A.90, G.92, L.140, D.151 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.20, A:V.28, A:L.140 Hydrogen bonds: A:K.42, A:T.86, A:M.89, A:M.89

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.227, H.247, E.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.227, A:W.246, A:E.248 Water bridges: A:K.249 EDO.3: 4 residues within 4Å: Chain A: Y.210, E.211, R.212, F.213 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.210, A:R.212 Water bridges: A:Y.210, A:Y.210, A:E.211, A:Y.229 EDO.4: 5 residues within 4Å: Chain A: Y.88, M.89, A.90, N.142, D.143 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.87, A:A.90, A:D.143 Water bridges: A:Y.88, A:N.142, A:D.143 EDO.5: 5 residues within 4Å: Chain A: R.230, H.232, L.233, A.234, S.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.230, A:A.234 EDO.6: 5 residues within 4Å: Chain A: R.137, K.170, F.171, P.172, W.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.171 Water bridges: A:V.173 EDO.7: 6 residues within 4Å: Chain A: M.61, V.70, T.86, S.150, D.151, F.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.70, A:D.151, A:D.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Damm-Ganamet, K.L. et al., Accelerating Lead Identification by High Throughput Virtual Screening: Prospective Case Studies from the Pharmaceutical Industry. J.Chem.Inf.Model. (2019)

Release Date

2019-03-13

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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