SMTL ID : 6nk5.1 (2 other biounits)

Electron Cryo-Microscopy Of Chikungunya VLP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: R.134, L.136, G.139, N.141 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.136 Hydrogen bonds: A:R.134, A:N.141 NAG.2: 4 residues within 4Å: Chain A: K.115, T.116, F.118 Chain B: N.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.116 NAG.3: 4 residues within 4Å: Chain D: R.134, L.136, G.139, N.141 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:L.136 NAG.4: 3 residues within 4Å: Chain D: K.115, T.116 Chain E: N.259 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:K.115, D:T.116, E:N.259 NAG.5: 4 residues within 4Å: Chain G: R.134, L.136, G.139, N.141 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:L.136 Hydrogen bonds: G:R.134, G:N.141 NAG.6: 2 residues within 4Å: Chain G: T.116 Chain H: N.259 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:N.259 NAG.7: 4 residues within 4Å: Chain J: R.134, L.136, G.139, N.141 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:L.136 Hydrogen bonds: J:N.141 NAG.8: 3 residues within 4Å: Chain J: T.116, K.181 Chain K: N.259 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain K Hydrogen bonds: J:T.116, J:T.116, K:N.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basore, K. et al., Cryo-EM Structure of Chikungunya Virus in Complex with the Mxra8 Receptor. Cell (2019)

Release Date

2019-05-22

Peptides

E1 glycoprotein: ADGJ
E2 glycoprotein: BEHK
Capsid protein: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

G
C

J
D

B
E

E
F

H
G

K
H

C
I

F
J

I
K

L
L

E1 glycoprotein

E2 glycoprotein

Capsid protein

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