SMTL ID : 6nk6.2 (1 other biounit)

Electron Cryo-Microscopy Of Chikungunya VLP in complex with mouse Mxra8 receptor

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-mer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: D.85, N.87, L.91, L.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.85, A:N.87 NAG.2: 2 residues within 4Å: Chain B: N.87, L.151 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.87 NAG.3: 4 residues within 4Å: Chain C: S.79, N.87, L.91, I.155 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.155 Hydrogen bonds: C:S.79, C:N.87 NAG.4: 4 residues within 4Å: Chain D: N.87, S.89, L.151, I.155 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.155 Hydrogen bonds: D:S.89 NAG.5: 3 residues within 4Å: Chain E: R.134, G.139, N.141 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.141 NAG.6: 3 residues within 4Å: Chain E: T.116, K.181 Chain F: N.259 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:T.116, F:N.259 NAG.7: 4 residues within 4Å: Chain H: R.134, L.136, G.139, N.141 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.136 Hydrogen bonds: H:N.141 NAG.8: 3 residues within 4Å: Chain H: K.115, T.116 Chain I: N.259 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain H Hydrogen bonds: I:N.259, H:T.116 NAG.9: 3 residues within 4Å: Chain K: R.134, G.139, N.141 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.141 NAG.10: 2 residues within 4Å: Chain K: T.116 Chain L: N.259 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:N.259 NAG.11: 3 residues within 4Å: Chain N: R.134, G.139, N.141 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:N.141 NAG.12: 4 residues within 4Å: Chain N: K.115, K.181 Chain O: A.258, N.259 4 PLIP interactions: 3 interactions with chain O, 1 interactions with chain N Hydrophobic interactions: O:A.258 Hydrogen bonds: O:N.259, O:N.259, N:K.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basore, K. et al., Cryo-EM Structure of Chikungunya Virus in Complex with the Mxra8 Receptor. Cell (2019)

Release Date

2019-05-22

Peptides

Matrix remodeling-associated protein 8: ABCD
E1 glycoprotein: EHKN
E2 glycoprotein: FILO
Capsid protein: GJMP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

E
A

H
B

K
C

N
D

F
E

I
F

L
G

O
H

G
I

J
J

M
K

P
L

Matrix remodeling-associated protein 8

E1 glycoprotein

E2 glycoprotein

Capsid protein

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