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SMTL ID : 6nl5.2
(1 other biounit)
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with 2'-deoxycytidine triphosphate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.31 Å
Oligo State
homo-dimer
Ligands
2 x
DCP
:
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
(Non-covalent)
DCP.1:
19 residues within 4Å:
Chain A:
T.18
,
G.19
,
V.20
,
G.21
,
K.22
,
T.23
,
V.24
,
K.44
,
D.56
,
E.115
,
G.118
,
G.176
,
S.177
,
L.203
,
P.204
,
G.206
,
A.207
,
A.208
Ligands:
MG.2
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:V.24
,
A:V.24
,
A:A.208
Hydrogen bonds:
A:G.19
,
A:V.20
,
A:G.21
,
A:K.22
,
A:T.23
,
A:T.23
,
A:V.24
,
A:G.118
,
A:G.176
,
A:G.206
,
A:A.207
,
A:A.208
Salt bridges:
A:K.22
,
A:K.22
,
A:K.44
DCP.3:
18 residues within 4Å:
Chain B:
T.18
,
G.19
,
V.20
,
G.21
,
K.22
,
T.23
,
V.24
,
D.56
,
E.115
,
G.118
,
G.176
,
S.177
,
L.203
,
P.204
,
G.206
,
A.207
,
A.208
Ligands:
MG.4
18
PLIP interactions
:
18 interactions with chain B
Hydrophobic interactions:
B:V.24
,
B:A.208
Hydrogen bonds:
B:G.19
,
B:V.20
,
B:G.21
,
B:K.22
,
B:T.23
,
B:T.23
,
B:V.24
,
B:G.118
,
B:G.176
,
B:G.206
,
B:A.207
,
B:A.208
Water bridges:
B:T.23
,
B:T.23
Salt bridges:
B:K.22
,
B:K.22
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
5 residues within 4Å:
Chain A:
T.23
,
K.44
,
D.56
,
E.115
Ligands:
DCP.1
4
PLIP interactions
:
3 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:T.23
,
A:D.56
,
A:E.115
,
H
2
O.1
MG.4:
6 residues within 4Å:
Chain B:
K.22
,
T.23
,
K.44
,
D.56
,
E.115
Ligands:
DCP.3
4
PLIP interactions
:
3 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:T.23
,
B:D.56
,
B:E.115
,
H
2
O.2
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Thompson, A.P. et al., Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with 2'-deoxycytidine triphosphate. To Be Published
Release Date
2020-01-15
Peptides
ATP-dependent dethiobiotin synthetase BioD:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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Secondary Structure
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ATP-dependent dethiobiotin synthetase BioD
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