- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x VJS: {(1R,2R)-2-[4-(carboxymethyl)benzene-1-carbonyl]cyclopentyl}propanedioic acid(Non-covalent)
VJS.2: 23 residues within 4Å:- Chain A: T.18, K.22, T.23, K.44, Q.47, T.48, R.52, D.54, D.56, P.78, M.79, A.80, P.81, G.116, A.117, G.118, V.122
- Chain B: L.150, G.151, T.152, L.153, N.154
- Ligands: SO4.3
21 PLIP interactions:16 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:P.78, A:A.80, A:V.122, B:L.150
- Hydrogen bonds: A:T.18, A:T.18, A:T.23, A:Q.47, A:G.118, B:G.151, B:L.153, B:N.154
- Water bridges: A:G.19, A:K.44, A:K.44, A:D.56, A:D.56, B:N.154
- Salt bridges: A:K.22, A:K.44, A:K.44
VJS.7: 20 residues within 4Å:- Chain A: L.150, G.151, T.152, L.153, N.154
- Chain B: T.18, K.22, K.44, Q.47, T.48, D.56, P.78, M.79, A.80, P.81, G.116, A.117, G.118, V.122
- Ligands: SO4.8
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:A.80, B:V.122, A:L.150
- Hydrogen bonds: B:Q.47, B:G.118, A:G.151, A:L.153, A:N.154
- Water bridges: B:T.18, B:G.19, B:K.44, B:T.48
- Salt bridges: B:K.22, B:K.44, B:K.44
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 8 residues within 4Å:- Chain A: G.19, V.20, G.21, K.22, T.23, E.115
- Ligands: VJS.2, SO4.5
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:T.18, A:T.18, A:G.19, A:V.20, A:G.21, A:K.22, A:T.23, A:E.115
- Water bridges: A:G.21, A:V.24
- Salt bridges: A:K.22
SO4.4: 7 residues within 4Å:- Chain A: G.17, T.18
- Chain B: L.150, G.151, H.155
- Ligands: GOL.1, GOL.6
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:T.18, A:T.18
- Water bridges: A:T.16, A:T.16, A:H.155, B:H.155
- Salt bridges: B:H.155
SO4.5: 6 residues within 4Å:- Chain A: G.19, V.20, G.21, G.176, S.177
- Ligands: SO4.3
5 PLIP interactions:5 interactions with chain A- Water bridges: A:G.176, A:S.177, A:S.177, A:S.177, A:G.206
SO4.8: 8 residues within 4Å:- Chain B: T.18, G.19, V.20, G.21, K.22, T.23
- Ligands: VJS.7, SO4.10
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:G.19, B:G.19, B:V.20, B:G.21, B:K.22, B:T.23, B:T.23, B:E.115
- Water bridges: B:V.24
- Salt bridges: B:K.22
SO4.9: 7 residues within 4Å:- Chain A: L.150, G.151, H.155
- Chain B: G.17, T.18
- Ligands: GOL.1, GOL.6
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:H.155, A:H.155
- Salt bridges: A:H.155
- Hydrogen bonds: B:T.18
SO4.10: 7 residues within 4Å:- Chain B: G.19, V.20, G.21, V.24, G.176, S.177
- Ligands: SO4.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.19
- Water bridges: B:V.24, B:G.176
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schumann, N.C. et al., Inhibition of Mycobacterium tuberculosis Dethiobiotin Synthase ( Mt DTBS): Toward Next-Generation Antituberculosis Agents. Acs Chem.Biol. (2021)
- Release Date
- 2021-09-08
- Peptides
- ATP-dependent dethiobiotin synthetase BioD: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x VJS: {(1R,2R)-2-[4-(carboxymethyl)benzene-1-carbonyl]cyclopentyl}propanedioic acid(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schumann, N.C. et al., Inhibition of Mycobacterium tuberculosis Dethiobiotin Synthase ( Mt DTBS): Toward Next-Generation Antituberculosis Agents. Acs Chem.Biol. (2021)
- Release Date
- 2021-09-08
- Peptides
- ATP-dependent dethiobiotin synthetase BioD: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B