SMTL ID : 6npi.1

Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragments

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x 60Q: 2-pyrrol-1-ylbenzoic acid(Non-covalent)

60Q.1: 11 residues within 4Å: Chain B: K.11, I.15, S.50, N.53, L.54, L.116, V.117, K.120, P.121, T.124, I.127 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.15, B:I.15, B:L.54, B:L.116, B:K.120, B:T.124 Hydrogen bonds: B:N.53 Water bridges: B:K.11 Salt bridges: B:K.11 pi-Cation interactions: B:K.11

1 x KW1: ({2-[(4-bromo-5-methyl-1,2-oxazol-3-yl)amino]-2-oxoethyl}sulfanyl)acetic acid(Non-covalent)

KW1.2: 8 residues within 4Å: Chain A: E.90 Chain B: K.48, Y.52, R.55, P.69, L.70, S.71, C.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messick, T.E. et al., Structure-based design of small-molecule inhibitors of EBNA1 DNA binding blocks Epstein-Barr virus latent infection and tumor growth. Sci Transl Med (2019)

Release Date

2019-03-20

Peptides

Epstein-Barr nuclear antigen 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epstein-Barr nuclear antigen 1

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