SMTL ID : 6npm.1

Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragments

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x KVD: 5-(phenylethynyl)pyridine-3-carboxylic acid(Non-covalent)

KVD.1: 13 residues within 4Å: Chain B: K.11, N.14, I.15, G.18, S.50, N.53, L.54, L.116, V.117, T.119, K.120, T.124, I.127 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.15, B:I.15, B:L.116, B:L.116, B:L.116, B:K.120 Hydrogen bonds: B:S.50, B:N.53 Water bridges: B:K.11, B:T.124, B:T.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messick, T.E. et al., Structure-based design of small-molecule inhibitors of EBNA1 DNA binding blocks Epstein-Barr virus latent infection and tumor growth. Sci Transl Med (2019)

Release Date

2019-03-20

Peptides

Epstein-Barr nuclear antigen 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epstein-Barr nuclear antigen 1

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