SMTL ID : 6nua.1 (1 other biounit)

DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x DG- DT- DC- PED- DG- DG- DA: DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3')(Non-covalent)

DG-DT-DC-PED-DG-DG-DA.1: 28 residues within 4Å: Chain A: C.1, G.2, R.3, A.38, P.39, W.66, W.67, L.72, I.73, N.74, A.75, R.76, T.79, S.83, R.84, M.85, F.86, P.88, E.104, W.105, K.112, T.148, H.159, R.161, R.205, G.208, N.209, V.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.148, A:H.159 Salt bridges: A:R.76, A:R.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, P.S. et al., Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-06-26

Peptides

SOS response-associated peptidase YedK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SOS response-associated peptidase YedK

Related Entries With Identical Sequence