SMTL ID : 6nuj.1

HIV-1 Integrase Catalytic Core Domain Complexed with Allosteric Inhibitor BI-224436

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x L3D: (2S)-tert-butoxy[4-(2,3-dihydropyrano[4,3,2-de]quinolin-7-yl)-2-methylquinolin-3-yl]acetic acid(Non-covalent)

L3D.1: 14 residues within 4Å: Chain A: Q.122, A.123, E.124, H.125, K.127, T.128, M.132 Chain B: Q.49, L.56, T.78, T.79, A.82, A.83, W.86 12 PLIP interactions: 5 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:T.128, B:Q.49, B:L.56, B:T.78, B:A.82, B:A.83, B:W.86 Hydrogen bonds: A:E.124, A:H.125, A:T.128 Salt bridges: A:H.125 Water bridges: B:Q.49 L3D.2: 14 residues within 4Å: Chain A: Q.49, L.56, T.78, T.79, A.82, A.83, W.86 Chain B: Q.122, A.123, E.124, H.125, K.127, T.128, M.132 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Q.49, A:L.56, A:T.78, A:A.82, A:A.83, A:W.86, B:T.128 Water bridges: A:Q.49 Hydrogen bonds: B:E.124, B:H.125 Salt bridges: B:H.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koneru, P.C. et al., HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors. Elife (2019)

Release Date

2019-12-11

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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