SMTL ID : 6oc9.1

S8 phosphorylated beta amyloid 40 fibrils

Coordinates

PDB Format Compare

Method

SOLID-STATE NMR

Oligo State

homo-10-mer

Ligands

10 x 2PO: PHOSPHONATE(Non-covalent)

2PO.1: 9 residues within 4Å: Chain A: R.5, D.7, S.8, G.9, V.24 Chain B: A.2, E.3, V.24, G.25 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.5, A:R.5, B:E.3 2PO.2: 10 residues within 4Å: Chain A: S.8, G.9 Chain B: E.3, S.8, G.9 Chain C: H.6, D.7, S.8, G.9, Y.10 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.9, B:E.3, B:E.3 2PO.3: 9 residues within 4Å: Chain C: E.3, S.8, Y.10, V.24 Chain D: H.6, D.7, S.8, V.24, G.25 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.7, C:V.24 Salt bridges: D:H.6 2PO.4: 9 residues within 4Å: Chain C: Y.10, V.24 Chain D: S.8, G.9, E.22, D.23, V.24 Chain E: D.23, V.24 No protein-ligand interaction detected (PLIP) 2PO.5: 7 residues within 4Å: Chain C: S.8, G.9 Chain D: D.7, S.8, G.9 Chain E: E.3, S.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.8, D:G.9 2PO.6: 8 residues within 4Å: Chain F: E.3, F.4, R.5, S.8, G.9, Y.10 Chain G: S.8 Ligands: 2PO.7 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.3, F:E.3 2PO.7: 7 residues within 4Å: Chain F: S.8 Chain G: E.3, F.4, S.8, V.24 Chain H: Y.10 Ligands: 2PO.6 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:Y.10, G:F.4 2PO.8: 5 residues within 4Å: Chain G: E.3 Chain H: E.3, H.6, D.7, S.8 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:E.3 2PO.9: 7 residues within 4Å: Chain H: E.3 Chain I: E.3, H.6, D.7, S.8 Chain J: H.6, S.8 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:E.3, I:E.3 2PO.10: 5 residues within 4Å: Chain J: A.2, E.3, H.6, D.7, S.8 4 PLIP interactions: 4 interactions with chain J Hydrogen bonds: J:E.3, J:E.3, J:S.8 Salt bridges: J:H.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Z.W. et al., Molecular structure of an N-terminal phosphorylated beta-amyloid fibril. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-06-05

Peptides

Amyloid-beta precursor protein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Amyloid-beta precursor protein

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