SMTL ID : 6oca.1 (1 other biounit)

Ricin A chain bound to VHH antibody V2G10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.112, T.114 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: A.258 Ligand excluded by PLIP

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 2 residues within 4Å: Chain A: R.232, I.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.233 PG4.4: 8 residues within 4Å: Chain A: Q.180, Y.181, E.183, G.184, E.185, R.187, T.188, R.233 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.185, A:R.187, A:R.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site. J.Mol.Biol. (2020)

Release Date

2020-04-01

Peptides

Ricin A chain: A
VHH antibody V2G10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ricin A chain

VHH antibody V2G10

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