SMTL ID : 6oca.2 (1 other biounit)

Ricin A chain bound to VHH antibody V2G10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.191 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: F.238, S.239, Y.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.232, A:S.239 EDO.3: 6 residues within 4Å: Chain A: S.226 Chain B: T.69, D.70, T.115, Y.116, R.118 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.69, B:R.118, A:E.218, A:S.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site. J.Mol.Biol. (2020)

Release Date

2020-04-01

Peptides

Ricin A chain: A
VHH antibody V2G10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Ricin A chain

VHH antibody V2G10

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