SMTL ID : 6ock.1

Crystal Structure of Leporine Serum Albumin in Complex with Ketoprofen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x 9KL: (2S)-2-[3-(benzenecarbonyl)phenyl]propanoic acid(Non-covalent)

9KL.1: 17 residues within 4Å: Chain A: L.387, N.391, C.392, F.403, L.407, R.410, Y.411, K.414, L.430, V.433, G.434, C.438, V.449, L.453, R.485, F.488, S.489 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:N.391, A:F.403, A:L.407, A:V.433, A:V.449, A:L.453, A:R.485 Hydrogen bonds: A:N.391, A:Y.411, A:Y.411 Water bridges: A:K.414, A:K.414 Salt bridges: A:R.410, A:K.414 9KL.2: 8 residues within 4Å: Chain A: Q.397, N.402, N.405, A.406, V.409, L.529, N.541, K.545 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:N.405, A:A.406, A:V.409, A:L.529, A:N.541 Hydrogen bonds: A:Q.397, A:K.545 Water bridges: A:N.541

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: R.199, Y.211, W.214, L.238 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.214, A:L.238 Hydrogen bonds: A:Y.211, A:Y.211 Water bridges: A:R.222 Salt bridges: A:R.199 ACT.4: 6 residues within 4Å: Chain A: Y.150, L.238, R.257, A.287, I.290, Y.291 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.290 Hydrogen bonds: A:Y.150 Salt bridges: A:R.257 ACT.5: 2 residues within 4Å: Chain A: S.429, Y.452 5 PLIP interactions: 5 interactions with chain A Water bridges: A:I.191, A:I.191, A:S.429, A:K.432 Salt bridges: A:K.432 ACT.6: 6 residues within 4Å: Chain A: K.205, H.464, E.465, T.474, C.477, S.478 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.474 Salt bridges: A:K.205, A:H.464 ACT.7: 3 residues within 4Å: Chain A: Q.390, N.391, R.410 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.410

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 9 residues within 4Å: Chain A: F.115, R.117, Y.138, H.146, L.182, L.185, K.186, A.189, L.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.117, A:H.146

1 x POG: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL(Non-covalent)

POG.9: 13 residues within 4Å: Chain A: R.209, K.212, A.213, F.228, D.324, L.325, L.327, G.328, L.331, L.347, G.350, K.351, E.354 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.209, A:K.212, A:L.327, A:L.347 Water bridges: A:A.210

2 x 2J3: (2R)-2-{[(2R)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol(Non-covalent)

2J3.10: 5 residues within 4Å: Chain A: I.20, Y.36, A.40, K.132 Ligands: 2J3.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.40, A:K.132 2J3.11: 9 residues within 4Å: Chain A: E.17, E.131, K.132, F.135, L.139, A.158, Q.159, K.162 Ligands: 2J3.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.132, A:L.139, A:Q.159, A:K.162 Hydrogen bonds: A:E.17, A:E.131, A:E.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zielinski, K. et al., Structural investigations of stereoselective profen binding by equine and leporine serum albumins. Chirality (2020)

Release Date

2020-01-15

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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