SMTL ID : 6oem.1

Cryo-EM structure of mouse RAG1/2 PRC complex (DNA0)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.600, D.708 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.600, A:D.708 MG.3: 2 residues within 4Å: Chain B: D.600, D.708 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.600, B:D.708

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.727, A:C.730, A:H.937, A:H.942 ZN.4: 4 residues within 4Å: Chain B: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.727, B:C.730, B:H.937, B:H.942

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Cutting antiparallel DNA strands in a single active site. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-01-29

Peptides

V(D)J recombination-activating protein 1: AB
V(D)J recombination-activating protein 2: CD
High mobility group protein B1: IJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

I
N

J
H

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

High mobility group protein B1

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