SMTL ID : 6oev.1

Structure of human Patched1 in complex with native Sonic Hedgehog

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 2 residues within 4Å: Chain A: Q.413, N.414 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: D.821, S.825, N.1000 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.821

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 3 residues within 4Å: Chain A: N.141, Q.145 Ligands: NAG.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.141 NAG.4: 2 residues within 4Å: Chain A: Q.145 Ligands: NAG.3 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 3 residues within 4Å: Chain B: Y.152, E.154, H.160 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, X. et al., Structures of human Patched and its complex with native palmitoylated sonic hedgehog. Nature (2018)

Release Date

2019-04-17

Peptides

Protein patched homolog 1: A
Sonic hedgehog protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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Protein patched homolog 1

Sonic hedgehog protein

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