SMTL ID : 6op0.1

Asymmetric hTNF-alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-trimer

Ligands

1 x A7A: (R)-{1-[(2,5-dimethylphenyl)methyl]-6-(1-methyl-1H-pyrazol-4-yl)-1H-benzimidazol-2-yl}(pyridin-4-yl)methanol(Non-covalent)

A7A.1: 19 residues within 4Å: Chain A: L.58, Y.60, Y.120, V.124, I.156, L.158 Chain B: L.58, Y.120, G.122, G.123, L.158 Chain C: L.58, Y.60, S.61, Q.62, Y.120, L.121, Y.152, I.156 14 PLIP interactions: 5 interactions with chain A, 7 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:L.58, A:L.58, A:Y.60, A:V.124, C:L.58, C:Y.60, C:Y.120, C:Y.120, C:Y.152, B:L.58, B:Y.120 Hydrogen bonds: A:Y.120, C:L.121 pi-Stacking: C:Y.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Connell, J. et al., Small molecules that inhibit TNF signalling by stabilising an asymmetric form of the trimer. Nat Commun (2019)

Release Date

2019-12-25

Peptides

Tumor necrosis factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tumor necrosis factor

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