SMTL ID : 6ous.1 (1 other biounit)

Structure of fusion glycoprotein from human respiratory syncytial virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: N.2 Chain H: K.39, G.57, P.59, R.61, E.81, D.82 1 PLIP interactions: 1 interactions with chain H, Hydrogen bonds: H:R.61, H:D.82, H:K.39 NAG-NAG-BMA-MAN.2: 5 residues within 4Å: Chain C: N.2 Chain J: Q.37, K.39, G.57, E.81 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:K.39, J:E.81 NAG-NAG-BMA-MAN.3: 7 residues within 4Å: Chain E: Q.1, N.2 Chain L: K.39, K.45, G.57, P.59, E.81 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:K.39

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.4: 1 residues within 4Å: Chain B: N.364 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.364 NAG.5: 1 residues within 4Å: Chain F: N.364 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, A. et al., A potent broadly neutralizing human RSV antibody targets conserved site IV of the fusion glycoprotein. Nat Commun (2019)

Release Date

2019-10-30

Peptides

Fusion glycoprotein F2: ACE
Fusion glycoprotein F1 fused with Fibritin trimerization domain: BDF
RB1 Fab Heavy Chain: GIK
RB1 Fab Light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
M

I
O

K
Q

H
N

J
P

L
R

Fusion glycoprotein F2

Fusion glycoprotein F1 fused with Fibritin trimerization domain

RB1 Fab Heavy Chain

RB1 Fab Light chain

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