SMTL ID : 6ous.2 (1 other biounit)

Structure of fusion glycoprotein from human respiratory syncytial virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: N.2 Chain H: K.39, K.45, G.57, P.59, E.81 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain B Hydrogen bonds: H:K.39, H:E.81, B:N.227, B:N.227 NAG-NAG-BMA-MAN.2: 5 residues within 4Å: Chain C: N.2 Chain J: K.39, G.57, P.59, E.81 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:K.39 NAG-NAG-BMA-MAN.3: 6 residues within 4Å: Chain E: N.2 Chain L: K.39, G.57, P.59, R.61, E.81 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:R.61, L:K.39, L:K.39

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain D: E.361, N.364 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.361, D:N.364 NAG.5: 1 residues within 4Å: Chain F: N.364 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, A. et al., A potent broadly neutralizing human RSV antibody targets conserved site IV of the fusion glycoprotein. Nat Commun (2019)

Release Date

2019-10-30

Peptides

Fusion glycoprotein F2: ACE
Fusion glycoprotein F1 fused with Fibritin trimerization domain: BDF
RB1 Fab Heavy Chain: GIK
RB1 Fab Light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

G
S

I
U

K
W

H
T

J
V

L
X

Fusion glycoprotein F2

Fusion glycoprotein F1 fused with Fibritin trimerization domain

RB1 Fab Heavy Chain

RB1 Fab Light chain

Related Entries With Identical Sequence