SMTL ID : 6oyf.1

The structure of condensation and adenylation domains of teixobactin-producing nonribosomal peptide synthetase Txo1 serine module

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: P.561, K.562, V.578 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.562, A:K.562

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.496, Q.497, R.500 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.497 Water bridges: A:Q.592 Salt bridges: A:R.496, A:R.500 SO4.3: 7 residues within 4Å: Chain A: R.522, D.544, K.656, P.658, P.683, Q.684, Q.686 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.656, A:Q.684, A:Q.684, A:Q.686 Water bridges: A:E.521, A:E.521 Salt bridges: A:R.522 SO4.4: 2 residues within 4Å: Chain A: P.548, A.549 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.549 SO4.5: 6 residues within 4Å: Chain A: R.496, R.500, Q.594, P.595, A.596, Q.597 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.594, A:A.596, A:Q.597 Salt bridges: A:R.496, A:R.500 SO4.6: 2 residues within 4Å: Chain A: R.492, R.496 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.492, A:R.492, A:R.496 Salt bridges: A:R.496 SO4.7: 3 residues within 4Å: Chain A: R.598, S.600, R.601 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.598, A:R.601 SO4.8: 3 residues within 4Å: Chain A: Q.607, P.608, H.609 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.609 Salt bridges: A:H.609 SO4.9: 2 residues within 4Å: Chain A: R.457, R.643 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.787 Salt bridges: A:R.643 SO4.10: 4 residues within 4Å: Chain A: R.414, A.443, E.444, R.447 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.414 Water bridges: A:A.443 Salt bridges: A:R.447 SO4.11: 5 residues within 4Å: Chain A: T.621, G.622, R.623, K.625, R.823 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.623 Salt bridges: A:R.623, A:K.625, A:R.823 SO4.12: 5 residues within 4Å: Chain A: T.617, S.618, G.619, T.621, K.625 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.617, A:G.619, A:S.620, A:T.621, A:T.621 Salt bridges: A:K.625 SO4.13: 3 residues within 4Å: Chain A: G.186, E.187, R.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.187, A:R.188 Salt bridges: A:R.188 SO4.14: 5 residues within 4Å: Chain A: G.733, E.734, A.735, Y.757, Y.861 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.733, A:G.733 Water bridges: A:E.734, A:A.735

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.15: 7 residues within 4Å: Chain A: D.513, E.514, R.515, M.628, Y.820, L.821, G.822 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.515, A:G.822 Water bridges: A:E.514, A:E.514, A:R.515, A:R.823, A:R.823 Salt bridges: A:D.513

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.16: 6 residues within 4Å: Chain A: R.623, G.822, R.823, P.824, E.825, L.826 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.623, A:R.823, A:E.825, A:L.826 Water bridges: A:D.558

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.17: 2 residues within 4Å: Chain A: H.609, H.610 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.609 GOL.18: 4 residues within 4Å: Chain A: G.30, G.31, A.144, L.372 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.31, A:L.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains. Curr Res Struct Biol (2020)

Release Date

2019-05-29

Peptides

Txo1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Txo1

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