SMTL ID : 6ozv.1

The structure of condensation and adenylation domains of teixobactin-producing nonribosomal peptide synthetase Txo1 serine module in complex with AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 12 residues within 4Å: Chain A: G.733, E.734, A.735, N.755, L.756, Y.757, G.758, P.759, T.760, D.849, Y.861, R.864 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.617, A:G.733, A:N.755, A:L.756, A:G.758, A:T.760, A:T.760, A:T.760, A:D.849, A:Y.861, A:R.864 Water bridges: A:S.732, A:T.760 pi-Stacking: A:Y.757

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.522, K.656, P.658, P.683, Q.684, Q.686 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.656, A:Q.684, A:Q.684, A:Q.686 Water bridges: A:E.521, A:E.521 Salt bridges: A:R.522 SO4.3: 3 residues within 4Å: Chain A: R.496, Q.497, R.500 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.497 Salt bridges: A:R.496, A:R.500 SO4.4: 2 residues within 4Å: Chain A: R.598, S.600 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.598 SO4.5: 4 residues within 4Å: Chain A: D.513, R.515, M.628, L.821 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.818, A:R.818 Salt bridges: A:R.515

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: T.657, P.658, F.661, H.705, V.707 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.656, A:K.656, A:K.656, A:Q.687

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains. Curr Res Struct Biol (2020)

Release Date

2019-05-29

Peptides

Txo1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Txo1

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