SMTL ID : 6p05.1

Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with compound 27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: R.17, T.19, Q.21, W.79, N.80, A.81, Q.82, E.126, E.127 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.19, A:N.80, A:A.81, A:E.126 Water bridges: A:R.17, A:R.17, A:R.17, A:T.19 GOL.2: 7 residues within 4Å: Chain A: L.1, E.2, A.48, V.49, N.52, L.53, P.54 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.1, A:L.1, A:L.1, A:N.52 Water bridges: A:N.52

1 x YF2: N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(1-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-3-yl)-1H-indol-4-yl}ethanesulfonamide(Non-covalent)

YF2.3: 18 residues within 4Å: Chain A: W.40, P.41, F.42, Q.43, Q.44, P.45, V.46, D.47, K.50, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105, M.108 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:Q.44, A:L.51, A:L.51, A:I.105 Hydrogen bonds: A:D.47, A:K.50, A:N.99, A:N.99 Water bridges: A:D.47, A:Y.56 pi-Stacking: A:W.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Novel Pyrrolopyridone Bromodomain and Extra-Terminal Motif (BET) Inhibitors Effective in Endocrine-Resistant ER+ Breast Cancer with Acquired Resistance to Fulvestrant and Palbociclib. J.Med.Chem. (2020)

Release Date

2020-05-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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