SMTL ID : 6p0p.1 (1 other biounit)

Human beta-tryptase co-crystal structure with 5-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-2-(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-[1,1'-biphenyl]-3-yl)-2-hydroxy-2H-1,3,2-benzodioxaborol-2-uide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x Y35: (3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}[1,1'-biphenyl]-3-yl){4-[3-(aminomethyl)phenyl]piperidin-1-yl}[3,4-di(hydroxy-kappaO)phenyl]methanonato(2-)hydroxyborate(1-)(Non-covalent)

Y35.1: 15 residues within 4Å: Chain A: Q.117, D.218, S.219, C.220, Q.221, S.224, V.242, W.244, G.245, E.246, G.247, C.248, G.255 Ligands: SO4.2, PGE.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.242 Hydrogen bonds: A:G.247, A:G.247

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.74, Q.221, G.222, S.224 Ligands: Y35.1, PGE.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.222, A:S.224, A:S.224 Salt bridges: A:H.74

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 12 residues within 4Å: Chain A: H.74, P.78, F.113, Y.114, T.115, A.116, Q.117, S.224, S.243, W.244 Ligands: Y35.1, SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.117, A:S.224, A:S.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giardina, S.F. et al., Novel, Self-Assembling Dimeric Inhibitors of Human beta Tryptase. J.Med.Chem. (2020)

Release Date

2020-03-25

Peptides

Tryptase alpha/beta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tryptase alpha/beta-1

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