SMTL ID : 6p0p.2 (1 other biounit)

Human beta-tryptase co-crystal structure with 5-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-2-(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-[1,1'-biphenyl]-3-yl)-2-hydroxy-2H-1,3,2-benzodioxaborol-2-uide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: C.59, H.74, Q.221, G.222, S.224 Ligands: PGE.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.221, A:G.222, A:S.224, A:S.224 Salt bridges: A:H.74 SO4.2: 3 residues within 4Å: Chain A: N.214, T.215, R.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.215, A:T.215 Salt bridges: A:R.216

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 3 residues within 4Å: Chain A: R.203, R.206, D.207 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.207 Salt bridges: A:R.206, A:D.207

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 9 residues within 4Å: Chain A: H.74, P.78, F.113, Y.114, T.115, A.116, S.243, W.244 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.114, A:S.224, A:S.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giardina, S.F. et al., Novel, Self-Assembling Dimeric Inhibitors of Human beta Tryptase. J.Med.Chem. (2020)

Release Date

2020-03-25

Peptides

Tryptase alpha/beta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tryptase alpha/beta-1

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