SMTL ID : 6p1j.1 (1 other biounit)

The structure of condensation and adenylation domains of teixobactin-producing nonribosomal peptide synthetase Txo2 serine module

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: T.624, K.628, R.826, L.829, R.833 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.624, A:K.628, A:R.826, A:R.833, A:R.833

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 6 residues within 4Å: Chain A: R.910, V.912, Y.914, A.944, V.946 Ligands: CL.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.912, A:V.946 Hydrogen bonds: A:Y.914, A:Y.914 Salt bridges: A:R.910

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: A.24, H.30, P.106, F.107, H.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.107 Salt bridges: A:H.30, A:H.134

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: A.897 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.450 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Ligands: FLC.2 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: F.664, G.761, K.958 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: W.199, T.297, L.298, F.332, V.335 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: Q.201 Ligand excluded by PLIP

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 3 residues within 4Å: Chain A: Y.29, H.135, Q.384 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.384, A:Q.384 Water bridges: A:T.297 GOL.11: 4 residues within 4Å: Chain A: T.251, L.252, Y.253, W.357 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.252, A:Y.253, A:W.357 GOL.12: 2 residues within 4Å: Chain A: D.307, A.799 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.800 GOL.13: 6 residues within 4Å: Chain A: Y.253, P.278, V.279, Q.325, S.356, W.357 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.357 GOL.14: 4 residues within 4Å: Chain A: G.736, Y.760, D.852, Y.864 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.737

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.15: 3 residues within 4Å: Chain A: R.518, M.631, L.824 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.518 SO4.16: 4 residues within 4Å: Chain A: T.620, S.621, G.622, S.623 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.621, A:G.622, A:S.623

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains. Curr Res Struct Biol (2020)

Release Date

2019-05-29

Peptides

Txo2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Txo2

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