SMTL ID : 6p20.1

Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-3-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: M.78 Chain B: M.78 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: D.38 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain B: K.58 No protein-ligand interaction detected (PLIP)

1 x STE: STEARIC ACID(Non-covalent)

STE.3: 25 residues within 4Å: Chain A: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain B: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain C: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Ligands: ELA.4, PLM.7 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: A:E.7, B:A.39, C:I.25

1 x ELA: 9-OCTADECENOIC ACID(Non-covalent)

ELA.4: 25 residues within 4Å: Chain A: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Chain B: I.17, V.19, V.23, T.24, I.25, V.43, Q.47 Chain C: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Ligands: STE.3, PLM.7 7 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:I.17, B:V.23, B:I.25, A:V.11, A:I.33, C:K.9, C:I.25

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: N.22 Chain B: D.6 Chain C: N.14, T.16 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.16, A:N.22 Water bridges: C:G.15, C:T.16

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.7: 25 residues within 4Å: Chain A: I.17, V.19, V.23, I.25, T.41, V.43, Q.47 Chain B: E.7, T.8, K.9, I.25, V.27, A.31, I.33 Chain C: K.9, V.11, G.15, T.16, I.17, I.33, V.35, A.39, T.41 Ligands: STE.3, ELA.4 7 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: B:E.7, C:I.33, A:I.17, A:I.25 Hydrogen bonds: C:T.41 Water bridges: C:A.39, A:Q.47

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 6 residues within 4Å: Chain D: A.12, G.13, H.41, H.46, C.74, H.76 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.41, D:H.46, D:C.74, D:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buth, S.A. et al., Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164. To Be Published

Release Date

2020-05-27

Peptides

Baseplate central spike complex protein gp5,PHIKZ164: ABC
PAAR-repeat central spike tip protein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Baseplate central spike complex protein gp5,PHIKZ164

PAAR-repeat central spike tip protein

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