SMTL ID : 6p2u.1

Structure of Mortalin-NBD with N6-propargyladenosine-5'-diphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NO7: 9-{5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-alpha-D-ribofuranosyl}-N-(prop-2-yn-1-yl)-9H-purin-6-amine(Non-covalent)

NO7.1: 21 residues within 4Å: Chain A: G.15, T.16, T.17, N.18, G.200, G.201, G.202, G.229, E.230, E.267, K.270, C.271, S.274, S.275, G.341, G.342, M.343, R.345, D.368 Ligands: PO4.2, MG.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.16, A:T.17, A:T.17, A:T.17, A:N.18, A:G.201, A:G.202, A:K.270, A:S.274, A:G.342, A:R.345, A:D.368, A:D.368 Water bridges: A:G.341

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 9 residues within 4Å: Chain A: G.15, T.16, K.75, P.148, E.176, T.203, D.205 Ligands: NO7.1, MG.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.16, A:T.16, A:E.176 Water bridges: A:D.13, A:G.200, A:T.203 Salt bridges: A:K.75

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.198, G.200, G.341 Ligands: NO7.1, PO4.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moseng, M.A. et al., 2- and N6-functionalized adenosine-5'-diphosphate analogs for the inhibition of mortalin. Febs Lett. (2019)

Release Date

2019-06-19

Peptides

Stress-70 protein, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Stress-70 protein, mitochondrial

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