SMTL ID : 6p72.2 (1 other biounit)

Crystal Structure of the Cedar henipavirus Attachment G Glycoprotein global domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.118, F.122, G.185, E.186, F.188, Q.246, N.247 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.186, A:N.247 NAG-NAG.2: 5 residues within 4Å: Chain A: D.135, N.136, N.197, N.232, R.235 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 4 residues within 4Å: Chain A: E.298, N.306, W.307, N.309 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.298

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 6 residues within 4Å: Chain A: K.20, S.21, N.369, T.371, T.372, L.374 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 5 residues within 4Å: Chain A: I.127, N.129, S.141, D.142, E.143 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.143 Hydrogen bonds: A:N.129, A:N.129, A:E.143, A:E.143 NAG.6: 2 residues within 4Å: Chain A: N.247, N.248 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laing, E.D. et al., Structural and functional analyses reveal promiscuous and species specific use of ephrin receptors by Cedar virus. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-09-25

Peptides

Attachment glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Attachment glycoprotein

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