- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ASP: ASPARTIC ACID(Non-covalent)(Covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 1 residues within 4Å:- Chain A: N.217
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.217, A:N.217
- Water bridges: A:N.217
GOL.3: 7 residues within 4Å:- Chain A: R.166, D.167, N.183, T.304, L.305, N.306, K.309
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.166, A:D.167, A:N.183, A:T.304, A:T.304, A:N.306
- Water bridges: A:N.306, A:N.306
GOL.4: 8 residues within 4Å:- Chain A: Q.288, D.294, A.295, G.298, F.299, P.324, Q.325, Q.328
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.288
- Water bridges: A:Q.288, A:G.298
GOL.6: 5 residues within 4Å:- Chain B: Y.189, H.191, K.194, I.195, D.196
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.189, B:H.191, B:D.196
GOL.7: 7 residues within 4Å:- Chain B: D.196, Y.197, Q.198
- Chain D: A.202, R.203, N.332, Q.333
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:R.203, D:N.332, B:Q.198
- Water bridges: B:Y.197
GOL.9: 1 residues within 4Å:- Chain C: N.217
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.217, C:N.217
- Water bridges: C:N.217
GOL.10: 7 residues within 4Å:- Chain C: R.166, D.167, N.183, T.304, L.305, N.306, K.309
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.166, C:N.183, C:T.304, C:N.306
- Water bridges: C:N.306, C:N.306
GOL.11: 8 residues within 4Å:- Chain C: Q.288, D.294, A.295, G.298, F.299, P.324, Q.325, Q.328
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.288
- Water bridges: C:Q.288, C:G.298
GOL.13: 5 residues within 4Å:- Chain D: Y.189, H.191, K.194, I.195, D.196
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.189, D:H.191, D:H.191, D:D.196
GOL.14: 7 residues within 4Å:- Chain B: A.202, R.203, N.332, Q.333
- Chain D: D.196, Y.197, Q.198
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:Q.198, B:R.203, B:N.332
- Water bridges: D:Y.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lubkowski, J. et al., Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci. (2019)
- Release Date
- 2019-09-04
- Peptides
- L-asparaginase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ASP: ASPARTIC ACID(Non-covalent)(Covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lubkowski, J. et al., Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci. (2019)
- Release Date
- 2019-09-04
- Peptides
- L-asparaginase 2: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D