SMTL ID : 6pfm.1

Crystal structure of GDC-0927 bound to estrogen receptor alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

homo-dimer

Ligands

2 x OGJ: (2S)-2-(4-{2-[3-(fluoromethyl)azetidin-1-yl]ethoxy}phenyl)-3-(3-hydroxyphenyl)-4-methyl-2H-1-benzopyran-6-ol(Non-covalent)

OGJ.1: 22 residues within 4Å: Chain A: M.70, L.73, T.74, L.76, A.77, D.78, E.80, L.81, W.110, L.111, L.114, M.115, L.118, R.121, F.131, M.148, I.151, F.152, L.155, G.248, H.251, L.252 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.77, A:L.81, A:W.110, A:F.131, A:L.252, A:L.252 Hydrogen bonds: A:L.114, A:R.121, A:R.121 Salt bridges: A:D.78 pi-Stacking: A:F.131 OGJ.2: 24 residues within 4Å: Chain B: M.70, L.73, T.74, L.76, A.77, D.78, E.80, L.81, W.110, L.111, L.114, M.115, L.118, R.121, F.131, M.148, I.151, F.152, L.155, G.248, M.249, H.251, L.252, K.256 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.77, B:F.131, B:I.151, B:L.155, B:L.252, B:L.252 Hydrogen bonds: B:L.114, B:R.121, B:R.121, B:H.251 Salt bridges: B:D.78 pi-Stacking: B:F.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Labadie, S.S. et al., Discovery of a C-8 hydroxychromene as a potent degrader of estrogen receptor alpha with improved rat oral exposure over GDC-0927. Bioorg.Med.Chem.Lett. (2019)

Release Date

2019-07-17

Peptides

Estrogen receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Estrogen receptor

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