SMTL ID : 6pg6.1 (1 other biounit)

WDR5delta23 bound to N-(4-(5-(hydroxymethyl)-1H-imidazol-2-yl)butyl)acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.161, K.207 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.161, A:K.207

1 x OH7: N-{4-[4-(hydroxymethyl)-1H-imidazol-2-yl]butyl}acetamide(Non-covalent)

OH7.2: 12 residues within 4Å: Chain A: S.29, S.71, F.113, C.114, S.155, A.156, Y.171, F.199, Y.240, C.241, F.243, I.285 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.113, A:I.285 Hydrogen bonds: A:S.71, A:C.241 pi-Stacking: A:F.113, A:F.243

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: N.245, A.288, C.289 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dennis, M.L. et al., Fragment screening for a protein-protein interaction inhibitor to WDR5. Struct Dyn. (2019)

Release Date

2019-12-11

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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