SMTL ID : 6pg8.2 (3 other biounits)

WDR5delta23 bound to (2-(3-phenylpropyl)-1H-imidazol-4-yl)methanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x OGY: [2-(3-phenylpropyl)-1H-imidazol-4-yl]methanol(Non-covalent)

OGY.1: 13 residues within 4Å: Chain A: V.28, S.29, A.45, I.70, S.71, F.113, C.114, S.155, A.156, F.199, C.241, F.243, I.285 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.45, A:F.113 Hydrogen bonds: A:S.71 pi-Stacking: A:F.113, A:F.243

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.161, N.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.205 Salt bridges: A:R.161, A:K.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dennis, M.L. et al., Fragment screening for a protein-protein interaction inhibitor to WDR5. Struct Dyn. (2019)

Release Date

2019-12-11

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

WD repeat-containing protein 5

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