SMTL ID : 6pnu.2 (2 other biounits)

Crystal structure of native DauA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.85, I.136, R.157, L.486 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.85, A:R.85 Water bridges: A:R.157 EDO.2: 5 residues within 4Å: Chain A: R.448 Chain B: F.74, V.160, G.161, S.240 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.240, A:R.448, A:R.448 Water bridges: B:V.162, B:V.162 EDO.3: 4 residues within 4Å: Chain A: E.100, Q.101, R.104, W.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.104, A:R.104 EDO.4: 3 residues within 4Å: Chain B: N.462, S.478, L.479 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.479 EDO.5: 4 residues within 4Å: Chain B: Q.416, S.419, D.420, D.423 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.416, B:D.420, B:D.420 EDO.6: 2 residues within 4Å: Chain B: R.104, W.115 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.100, B:R.104, B:R.104 EDO.7: 3 residues within 4Å: Chain B: D.346, A.347, N.348 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.347, B:N.348 EDO.8: 5 residues within 4Å: Chain B: Y.178, C.302, V.303, Y.459, H.465 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hettle, A.G. et al., Insights into the kappa / iota-carrageenan metabolism pathway of some marinePseudoalteromonasspecies. Commun Biol (2019)

Release Date

2019-10-02

Peptides

Aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Aldehyde dehydrogenase

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