SMTL ID : 6poe.1

Structure of ACLY in complex with CoA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x COA: COENZYME A(Non-covalent)

COA.1: 17 residues within 4Å: Chain B: K.964, L.969, I.970, I.973, T.1014, K.1017, K.1018, L.1021 Chain D: F.533, F.572, A.573, S.574, R.576, S.577, I.597, V.626, G.665 11 PLIP interactions: 5 interactions with chain D, 6 interactions with chain B Hydrogen bonds: D:Q.505, D:S.574, D:S.574, D:S.574, B:I.970, B:I.970 Salt bridges: D:R.576, B:K.964, B:K.1017, B:K.1018, B:K.1018 COA.2: 16 residues within 4Å: Chain B: F.533, F.572, S.574, R.576, S.577, I.597, A.598, E.599 Chain D: K.964, L.969, I.970, I.973, T.1014, K.1017, K.1018, L.1021 10 PLIP interactions: 7 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:I.970, D:I.970, D:T.1014, B:Q.505, B:S.574 Salt bridges: D:K.964, D:K.1017, D:K.1018, D:K.1018, B:R.576 COA.3: 20 residues within 4Å: Chain A: K.964, L.969, I.970, I.973, T.1014, K.1017, K.1018, L.1021 Chain C: F.533, F.572, A.573, S.574, R.576, I.597, A.598, E.599, A.624, T.625, V.626, G.665 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain C Hydrogen bonds: A:I.970, A:I.970, A:T.1014, C:S.574, C:S.574, C:R.576, C:I.597 Salt bridges: A:K.964, A:K.1017, A:K.1018, C:R.576 COA.4: 19 residues within 4Å: Chain A: Y.531, S.574 Chain C: D.933, R.934, A.938, K.964, L.969, I.970, M.971, G.972, I.973, G.974, H.975, R.976, K.1018, N.1020, L.1021, N.1024, D.1026 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:A.938 Hydrogen bonds: C:R.934, C:K.964, C:I.970, C:I.970, C:G.972, C:N.1020, A:Y.531, A:S.574 Salt bridges: C:K.964, C:R.976, C:K.1018

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Molecular basis for acetyl-CoA production by ATP-citrate lyase. Nat.Struct.Mol.Biol. (2020)

Release Date

2019-12-25

Peptides

ATP-citrate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ATP-citrate synthase

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