SMTL ID : 6ps1.1

XFEL beta2 AR structure by ligand exchange from Alprenolol to Timolol.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x TIM: (2S)-1-(tert-butylamino)-3-[(4-morpholin-4-yl-1,2,5-thiadiazol-3-yl)oxy]propan-2-ol(Non-covalent)

TIM.1: 17 residues within 4Å: Chain A: W.133, T.134, D.137, V.138, V.141, T.142, F.217, Y.223, S.227, S.231, W.438, F.441, F.442, N.445, Y.460, N.464, Y.468 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.133, A:T.134, A:F.217, A:Y.460 Hydrogen bonds: A:D.137, A:T.142, A:N.445, A:Y.460, A:N.464, A:Y.468 pi-Stacking: A:F.442

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: T.90, V.91, T.92, R.155, Y.165, Q.166, S.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.90, A:V.91, A:T.92, A:T.92, A:S.167 Salt bridges: A:R.155 SO4.3: 7 residues within 4Å: Chain A: G.366, F.367, N.369, S.370, N.385, K.388, S.389 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.369 SO4.4: 4 residues within 4Å: Chain A: T.395, P.396, N.397, R.398 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.395, A:N.397, A:N.397, A:R.398

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.5: 9 residues within 4Å: Chain A: Y.94, T.97, S.98, C.101, R.175, I.178, L.179, W.182 Ligands: OLC.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.97, A:I.178, A:W.182, A:W.182, A:W.182 Hydrogen bonds: A:R.175

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.6: 5 residues within 4Å: Chain A: I.79, A.83, K.84, L.104 Ligands: OLC.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.79, A:L.104 OLC.7: 8 residues within 4Å: Chain A: I.79, A.83, Q.89, Y.94, T.97, C.101 Ligands: CLR.5, OLC.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.94

1 x OLA: OLEIC ACID(Non-covalent)

OLA.8: 4 residues within 4Å: Chain A: V.240, S.244, G.432, T.435 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.240, A:T.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishchenko, A. et al., Toward G protein-coupled receptor structure-based drug design using X-ray lasers. Iucrj (2019)

Release Date

2019-11-13

Peptides

Fusion protein of Beta-2 adrenergic receptor and T4 lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Fusion protein of Beta-2 adrenergic receptor and T4 lysozyme

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