SMTL ID : 6ps8.1

XFEL MT1R structure by ligand exchange from agomelatine to 2-phenylmelatonin.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x JEY: N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide(Non-covalent)

JEY.1: 16 residues within 4Å: Chain A: A.95, M.98, G.99, V.102, V.150, N.153, L.159, T.169, F.170, Q.172, V.183, L.432, N.433, Y.459, A.462, Y.463 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:M.98, A:V.102, A:V.150, A:L.159, A:F.170, A:V.183, A:L.432, A:Y.459, A:A.462, A:Y.463 Hydrogen bonds: A:A.95, A:N.153, A:T.169, A:Q.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishchenko, A. et al., Toward G protein-coupled receptor structure-based drug design using X-ray lasers. Iucrj (2019)

Release Date

2019-11-13

Peptides

Fusion protein of Melatonin receptor type 1A and GlgA glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Fusion protein of Melatonin receptor type 1A and GlgA glycogen synthase

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