SMTL ID : 6pt1.4 (3 other biounits)

Crystal Structure of Class D Beta-lactamase OXA-48 with Meropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: K.71, V.118, W.155 Ligand excluded by PLIP

1 x MER: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid(Covalent)

MER.2: 12 residues within 4Å: Chain A: A.67, S.68, I.100, W.103, S.116, V.118, L.156, T.207, G.208, Y.209, L.245, R.248 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.100, A:V.118, A:L.156 Hydrogen bonds: A:S.68, A:S.116, A:S.116, A:T.207, A:T.207, A:Y.209 Salt bridges: A:K.206, A:R.248

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: F.91, K.92, W.93, D.94, R.98, P.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.94, A:R.98 Water bridges: A:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akhtar, A. et al., Structural Basis for Substrate Specificity and Carbapenemase Activity of OXA-48 Class D beta-Lactamase. Acs Infect Dis. (2020)

Release Date

2020-01-22

Peptides

Class D Carbapenemase OXA-48: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Class D Carbapenemase OXA-48

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