SMTL ID : 6pt5.1 (3 other biounits)

Crystal Structure of Class D Beta-lactamase OXA-48 with Cefoxitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.204 Ligand excluded by PLIP

1 x 1S7: (2R)-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Covalent)

1S7.2: 14 residues within 4Å: Chain A: A.67, S.68, W.103, S.116, V.118, L.156, K.206, T.207, G.208, Y.209, S.210, T.211, R.212, R.248 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.212 Hydrogen bonds: A:S.68, A:S.116, A:S.116, A:T.207, A:Y.209, A:Y.209 Salt bridges: A:K.206, A:R.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akhtar, A. et al., Structural Basis for Substrate Specificity and Carbapenemase Activity of OXA-48 Class D beta-Lactamase. Acs Infect Dis. (2020)

Release Date

2020-01-22

Peptides

Class D Carbapenemase OXA-48: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Class D Carbapenemase OXA-48

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