SMTL ID : 6pv6.1

Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.4608, I.4610, C.4611, H.4628, H.4633 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.4608, A:C.4611, A:C.4611, A:H.4628, A:H.4633 ZN.3: 5 residues within 4Å: Chain B: C.4608, I.4610, C.4611, H.4628, H.4633 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.4608, B:C.4611, B:C.4611, B:H.4628, B:H.4633 ZN.5: 5 residues within 4Å: Chain C: C.4608, I.4610, C.4611, H.4628, H.4633 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:C.4608, C:C.4611, C:C.4611, C:H.4628, C:H.4633 ZN.7: 5 residues within 4Å: Chain D: C.4608, I.4610, C.4611, H.4628, H.4633 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:C.4608, D:C.4611, D:C.4611, D:H.4628, D:H.4633

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.4651, A:H.4653 CA.4: 4 residues within 4Å: Chain B: Q.3620, T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.4651, B:H.4653 CA.6: 3 residues within 4Å: Chain C: T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.4651, C:H.4653 CA.8: 3 residues within 4Å: Chain D: T.4651, E.4652, H.4653 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.4651, D:H.4653

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dashti, A. et al., Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun (2020)

Release Date

2020-08-12

Peptides

Ryanodine receptor 1: ABCD
Peptidyl-prolyl cis-trans isomerase FKBP1B: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
I

D
G

E
F

F
A

G
H

H
J

Membrane

We predict this structure to be a membrane protein.
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Ryanodine receptor 1

Peptidyl-prolyl cis-trans isomerase FKBP1B

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