SMTL ID : 6q0w.1

Structure of DDB1-DDA1-DCAF15 complex bound to Indisulam and RBM39

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x EF6: N~1~-(3-chloro-1H-indol-7-yl)benzene-1,4-disulfonamide(Non-covalent)

EF6.1: 13 residues within 4Å: Chain B: T.246, F.247, Q.248, P.249, A.250, F.251 Chain C: R.215, V.219, M.223, L.226 Chain D: N.35, D.39, M.40 8 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: B:A.250, C:V.219 Hydrogen bonds: B:F.247, B:F.247, B:A.250, B:F.251 Water bridges: D:D.39, D:D.39

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.209, C.212, C.227, H.230 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.209, B:C.212, B:C.227, B:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faust, T.B. et al., Structural complementarity facilitates E7820-mediated degradation of RBM39 by DCAF15. Nat.Chem.Biol. (2020)

Release Date

2019-11-13

Peptides

DNA damage-binding protein 1: A
DDB1- and CUL4-associated factor 15: B
DDB1- and CUL4-associated factor 15: C
RNA-binding protein 39: D
DET1- and DDB1-associated protein 1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

DNA damage-binding protein 1

DDB1- and CUL4-associated factor 15

DDB1- and CUL4-associated factor 15

RNA-binding protein 39

DET1- and DDB1-associated protein 1

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