SMTL ID : 6boy.1

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET6 PROTAC.

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.33 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x ZN: ZINC ION(Non-covalent)
1 x RN6: 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(8-{[({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)acetyl]amino}octyl)acetamide(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Nowak, R.P. et al., Plasticity in binding confers selectivity in ligand-induced protein degradation. Nat. Chem. Biol. (2018)
Peptides
DNA damage-binding protein 1: A
Protein cereblon: B
Bromodomain-containing protein 4: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C

DNA damage-binding protein 1

Protein cereblon

Bromodomain-containing protein 4

Related Entries With Identical Sequence

2oss.1 | 2yel.1 | 3mxf.1 | 3p5o.1 | 3svf.1 | 3svg.1 | 3u5j.1 | 3u5k.1 | 3u5k.2 | 3u5k.3 | 3u5k.4 | 3u5l.1 | 3uvw.1 | 3uvx.1 | 3uvy.1 | 3uw9.1 | 3uw9.2 | 3zyu.1 | 3zyu.2 | 4a9l.1 | 4bw1.1 | 4bw2.1 | 4bw3.1 | 4bw4.1 | 4c67.1 | 4cfk.1 | 4cfl.1 | 4cl9.1 | 4clb.1 | 4e96.1  more...