SMTL ID : 6q36.1

TEAD4(216-434) complexed with optimized peptide 9 and myristoate (covalently bound) at 2.01A resolution: Structure-based design of potent linear peptide inhibitors of the YAP-TEAD protein-protein interaction derived from the YAP omega-loop sequence

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 9 residues within 4Å: Chain A: A.17, V.102, V.120, V.128, K.130, L.152, C.153, I.181, F.201 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.17, A:V.102, A:V.128, A:L.152, A:I.181, A:F.201 Hydrogen bonds: A:C.153 MYR.4: 10 residues within 4Å: Chain B: A.17, V.34, V.102, T.118, V.120, K.130, L.152, C.153, I.181, F.201 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.17, B:V.34, B:V.102, B:T.118, B:L.152, B:I.181 Hydrogen bonds: B:C.153

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: R.137, E.139, S.144, R.146 Chain B: R.137, R.146 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.144 Water bridges: A:R.146, B:R.146, B:H.148 Salt bridges: A:R.137, A:R.146, B:R.137 PO4.3: 6 residues within 4Å: Chain A: K.30, S.103, R.146, H.148 Chain B: H.148 Ligands: PO4.6 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.103, A:R.146 Salt bridges: A:K.30, A:H.148, B:H.148 PO4.5: 6 residues within 4Å: Chain B: H.35, I.36, G.37, Q.38, S.39, H.212 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.37, B:Q.38, B:S.39 Water bridges: B:H.212, B:H.212, B:H.212 Salt bridges: B:H.35, B:H.212 PO4.6: 6 residues within 4Å: Chain A: H.148, R.149 Chain B: K.30, H.148, R.149 Ligands: PO4.3 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Water bridges: B:K.30, B:K.30, B:S.103 Salt bridges: B:K.30, B:H.148, B:R.149, A:K.30, A:H.148 Hydrogen bonds: A:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furet, P. et al., Structure-based design of potent linear peptide inhibitors of the YAP-TEAD protein-protein interaction derived from the YAP omega-loop sequence. Bioorg.Med.Chem.Lett. (2019)

Release Date

2019-07-03

Peptides

Transcriptional enhancer factor TEF-3: AB
ACE-PRO-6CW-ARG-LEU-ARG-LYS-2JH-HYP-ASP-SER-PHE-ALN-LYS-GLU-PRO-NH2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Transcriptional enhancer factor TEF-3

ACE-PRO-6CW-ARG-LEU-ARG-LYS-2JH-HYP-ASP-SER-PHE-ALN-LYS-GLU-PRO-NH2

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