SMTL ID : 8caa.1

Crystal structure of TEAD4 in complex with YTP-13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x U3F: 4-[bis(fluoranyl)methoxy]-2-[(2~{S})-5-chloranyl-6-fluoranyl-2-[[(4-oxidanylcyclohexyl)amino]methyl]-2-phenyl-3~{H}-1-benzofuran-4-yl]-3-fluoranyl-benzamide(Non-covalent)

U3F.1: 15 residues within 4Å: Chain A: V.51, Q.55, I.56, K.59, L.81, K.83, F.84, W.85, N.173, S.174, E.177, T.180, V.200, F.201, E.202 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.83, A:K.83, A:W.85, A:N.173, A:V.200, A:V.200, A:E.202 Hydrogen bonds: A:Q.55 Water bridges: A:S.174 Halogen bonds: A:Q.55 U3F.3: 15 residues within 4Å: Chain B: V.51, Q.55, I.56, K.59, L.81, K.83, F.84, W.85, N.173, S.174, E.177, T.180, V.200, F.201, E.202 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Q.55, B:I.56, B:K.83, B:K.83, B:W.85, B:N.173, B:V.200, B:V.200, B:E.202 Hydrogen bonds: B:Q.55, B:E.202 pi-Cation interactions: B:K.59 Halogen bonds: B:Q.55

2 x U3O: (2~{R})-2-[2-chloranyl-5-[2-chloranyl-4-(trifluoromethyl)phenoxy]phenyl]sulfanylpropanoic acid(Non-covalent)

U3O.2: 19 residues within 4Å: Chain A: F.15, A.17, F.33, V.34, A.86, L.88, V.102, T.118, K.130, L.152, M.156, F.159, I.160, L.163, L.176, F.179, I.181, Y.199, F.201 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.15, A:V.34, A:V.102, A:L.152, A:I.160, A:F.179, A:I.181, A:F.201, A:F.201 Salt bridges: A:K.130 U3O.4: 20 residues within 4Å: Chain B: F.15, A.17, F.33, V.34, A.86, L.88, V.102, T.118, V.120, K.130, L.152, M.156, F.159, I.160, L.163, L.176, F.179, I.181, Y.199, F.201 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.15, B:V.34, B:V.102, B:T.118, B:V.120, B:I.160, B:F.179, B:F.201, B:F.201 Hydrogen bonds: B:T.118 Salt bridges: B:K.130

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 5 residues within 4Å: Chain B: H.35, I.36, G.37, Q.38, H.212 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.37, B:Q.38 Salt bridges: B:H.35, B:H.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sellner, H. et al., Optimization of a Class of Dihydrobenzofurane Analogs toward Orally Efficacious YAP-TEAD Protein-Protein Interaction Inhibitors. Chemmedchem (2023)

Release Date

2023-04-12

Peptides

Transcriptional enhancer factor TEF-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional enhancer factor TEF-3

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