SMTL ID : 6qa1.1

ERK2 mini-fragment binding

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.195, R.199, R.202, H.240, Y.241 7 PLIP interactions: 7 interactions with chain A Water bridges: A:Y.195, A:R.199, A:R.202, A:Y.241, A:Y.241 Salt bridges: A:R.199, A:R.202

7 x HVK: pyridin-2-amine(Non-covalent)

HVK.2: 5 residues within 4Å: Chain A: S.130, D.132, H.133, Y.136, Y.324 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.132, A:Y.136 Water bridges: A:D.132 HVK.3: 9 residues within 4Å: Chain A: I.39, A.60, I.92, Q.113, D.114, L.115, M.116, L.164 Ligands: HVK.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.60 Hydrogen bonds: A:Q.113, A:M.116 HVK.4: 4 residues within 4Å: Chain A: K.146, S.150, E.313, I.332 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.332, A:I.332 Hydrogen bonds: A:E.313 HVK.5: 4 residues within 4Å: Chain A: D.243, N.246, H.247 Ligands: HVK.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.243 pi-Stacking: A:H.247 HVK.6: 7 residues within 4Å: Chain A: V.47, A.60, I.61, K.62, I.111, Q.113 Ligands: HVK.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.47, A:V.47, A:K.62 Water bridges: A:E.79, A:Q.113, A:Q.113, A:Q.113 HVK.7: 7 residues within 4Å: Chain A: N.246, L.249, G.250, L.275, P.276, K.278 Ligands: HVK.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.276 HVK.8: 10 residues within 4Å: Chain A: E.205, L.208, N.209, D.259, C.262, I.263, F.304, N.305, P.306, H.307 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.263 Hydrogen bonds: A:N.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Reilly, M. et al., Crystallographic screening using ultra-low-molecular-weight ligands to guide drug design. Drug Discov Today (2019)

Release Date

2019-06-26

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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