SMTL ID : 6qag.1

ERK2 mini-fragment binding

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.195, R.199, R.202, Y.241 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.194, A:Y.195 Salt bridges: A:R.199, A:R.202 SO4.2: 4 residues within 4Å: Chain A: R.85, P.336, F.337, K.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.338 Salt bridges: A:R.85 SO4.3: 3 residues within 4Å: Chain A: A.290, D.291, S.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.292

2 x HUH: 1~{H}-1,2,3-triazole(Non-covalent)

HUH.4: 7 residues within 4Å: Chain A: A.60, Q.113, D.114, L.115, M.116, L.164 Ligands: HUH.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.116 HUH.5: 7 residues within 4Å: Chain A: V.47, A.60, I.61, K.62, I.111, Q.113 Ligands: HUH.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Reilly, M. et al., Crystallographic screening using ultra-low-molecular-weight ligands to guide drug design. Drug Discov Today (2019)

Release Date

2019-03-27

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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