SMTL ID : 6qeh.1

CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 IN COMPLEX WITH AN INHIBITOR 5-Chloro-quinolin-8-ol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.74, H.354, R.368 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.74, A:R.74, A:H.354, A:R.368

1 x HZQ: 5-chloranylquinolin-8-ol(Non-covalent)

HZQ.2: 11 residues within 4Å: Chain A: F.113, H.125, D.145, D.156, H.225, I.232, E.258, H.276, E.353 Ligands: MN.3, MN.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.113, A:F.113, A:I.232 Water bridges: A:Q.351

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: D.156, H.225, E.258, E.353 Ligands: HZQ.2, MN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.156, A:H.225, A:E.258, A:E.353 MN.4: 6 residues within 4Å: Chain A: F.113, D.145, D.156, E.353 Ligands: HZQ.2, MN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.145, A:D.145, A:D.156, A:E.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinrich, T. et al., Discovery and Structure-Based Optimization of Next-Generation Reversible Methionine Aminopeptidase-2 (MetAP-2) Inhibitors. J.Med.Chem. (2019)

Release Date

2019-05-01

Peptides

Methionine aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 2

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