SMTL ID : 6qf4.1

X-Ray structure of human Serine/Threonine Kinase 17B (STK17B) aka DRAK2 in complex with ADP obtained by on-chip soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.161, D.177 Ligands: ADP.5 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.177, H2O.2, H2O.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: V.44, R.46 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: K.60, L.62, E.78, L.82, I.92, L.106, L.108, V.176, D.177, F.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.60, A:E.78, A:D.177

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 3 residues within 4Å: Chain A: H.148, T.212, T.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.212 Water bridges: A:T.212

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 19 residues within 4Å: Chain A: L.37, G.38, G.40, A.43, V.45, A.58, K.60, I.92, L.108, E.109, Y.110, A.111, E.115, Q.160, N.161, L.163, V.176, D.177 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.109, A:A.111, A:E.115, A:Q.160 Water bridges: A:K.60, A:N.161, A:D.177 Salt bridges: A:K.60, A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lieske, J. et al., On-chip crystallization for serial crystallography experiments and on-chip ligand-binding studies. Iucrj (2019)

Release Date

2019-07-10

Peptides

Serine/threonine-protein kinase 17B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 17B

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