SMTL ID : 6qgj.1

Structure of human Bcl-2 in complex with fragment/ABT-263 hybrid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x J1T: 4-[4-[(1~{R})-1-(6-methoxy-1,3-benzodioxol-5-yl)-2-pyrrolidin-1-yl-ethyl]phenyl]-~{N}-[4-[[(2~{R})-4-morpholin-4-yl-1-phenylsulfanyl-butan-2-yl]amino]-3-(trifluoromethylsulfonyl)phenyl]sulfonyl-benzamide(Non-covalent)

J1T.1: 18 residues within 4Å: Chain A: A.52, F.56, Y.60, D.63, L.89, N.95, W.96, G.97, R.98, V.100, F.105, F.150, L.153, Y.154, G.155, N.156, N.157, E.161 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.56, A:F.56, A:F.56, A:Y.60, A:R.98, A:Y.154 Hydrogen bonds: A:N.95, A:N.95, A:W.96, A:G.97 Salt bridges: A:D.63, A:E.161 pi-Stacking: A:Y.60 Halogen bonds: A:E.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, J.B. et al., Establishing Drug Discovery and Identification of Hit Series for the Anti-apoptotic Proteins, Bcl-2 and Mcl-1. Acs Omega (2019)

Release Date

2019-06-12

Peptides

Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptosis regulator Bcl-2,Bcl-2-like protein 1,Apoptosis regulator Bcl-2,Bcl-2-like protein 1

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