SMTL ID : 6ql5.1

Structure of fatty acid synthase complex with bound gamma subunit from Saccharomyces cerevisiae at 2.8 angstrom

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-mer

Ligands

6 x PNS: 4'-PHOSPHOPANTETHEINE(Covalent)

PNS.1: 14 residues within 4Å: Chain A: S.180 Chain I: Q.159, G.160, N.161, H.269, S.270, M.334, L.366, N.368, N.372, V.374, S.506, L.511, R.514 4 PLIP interactions: 4 interactions with chain I Hydrogen bonds: I:N.368, I:N.372, I:R.514, I:R.514 PNS.2: 14 residues within 4Å: Chain B: S.180 Chain G: Q.159, G.160, N.161, H.269, S.270, M.334, L.366, N.368, N.372, V.374, S.506, L.511, R.514 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain G Salt bridges: B:K.173 Hydrogen bonds: G:N.368, G:N.372, G:R.514, G:R.514 PNS.3: 14 residues within 4Å: Chain C: S.180 Chain H: Q.159, G.160, N.161, H.269, S.270, M.334, L.366, N.368, N.372, V.374, S.506, L.511, R.514 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:N.368, H:N.372, H:R.514, H:R.514 PNS.4: 14 residues within 4Å: Chain D: S.180 Chain L: Q.159, G.160, N.161, H.269, S.270, M.334, L.366, N.368, N.372, V.374, S.506, L.511, R.514 4 PLIP interactions: 4 interactions with chain L Hydrogen bonds: L:N.368, L:N.372, L:R.514, L:R.514 PNS.5: 14 residues within 4Å: Chain E: S.180 Chain J: Q.159, G.160, N.161, H.269, S.270, M.334, L.366, N.368, N.372, V.374, S.506, L.511, R.514 4 PLIP interactions: 4 interactions with chain J Hydrogen bonds: J:N.368, J:N.372, J:R.514, J:R.514 PNS.6: 14 residues within 4Å: Chain F: S.180 Chain K: Q.159, G.160, N.161, H.269, S.270, M.334, L.366, N.368, N.372, V.374, S.506, L.511, R.514 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:N.368, K:N.372, K:R.514, K:R.514

6 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.7: 20 residues within 4Å: Chain G: P.591, G.592, M.593, T.594, C.596, N.646, I.648, G.678, K.702, T.729, G.733, G.734, S.765, G.766, L.796, G.798, S.799, M.802, L.1050, A.1055 15 PLIP interactions: 15 interactions with chain G Hydrophobic interactions: G:M.593, G:L.1050, G:L.1050 Hydrogen bonds: G:G.592, G:T.594, G:N.646, G:K.702, G:K.702, G:K.702, G:G.734, G:G.734, G:G.766, G:G.798, G:S.799, G:S.799 FMN.8: 20 residues within 4Å: Chain H: P.591, G.592, M.593, T.594, C.596, N.646, I.648, G.678, K.702, T.729, G.733, G.734, S.765, G.766, L.796, G.798, S.799, M.802, L.1050, A.1055 15 PLIP interactions: 15 interactions with chain H Hydrophobic interactions: H:M.593, H:L.1050, H:L.1050 Hydrogen bonds: H:G.592, H:T.594, H:N.646, H:K.702, H:K.702, H:K.702, H:G.734, H:G.734, H:G.766, H:G.798, H:S.799, H:S.799 FMN.9: 20 residues within 4Å: Chain I: P.591, G.592, M.593, T.594, C.596, N.646, I.648, G.678, K.702, T.729, G.733, G.734, S.765, G.766, L.796, G.798, S.799, M.802, L.1050, A.1055 15 PLIP interactions: 15 interactions with chain I Hydrophobic interactions: I:M.593, I:L.1050, I:L.1050 Hydrogen bonds: I:G.592, I:T.594, I:N.646, I:K.702, I:K.702, I:K.702, I:G.734, I:G.734, I:G.766, I:G.798, I:S.799, I:S.799 FMN.10: 20 residues within 4Å: Chain J: P.591, G.592, M.593, T.594, C.596, N.646, I.648, G.678, K.702, T.729, G.733, G.734, S.765, G.766, L.796, G.798, S.799, M.802, L.1050, A.1055 16 PLIP interactions: 16 interactions with chain J Hydrophobic interactions: J:M.593, J:L.1050, J:L.1050 Hydrogen bonds: J:G.592, J:T.594, J:N.646, J:K.702, J:K.702, J:K.702, J:T.729, J:G.734, J:G.734, J:G.766, J:G.798, J:S.799, J:S.799 FMN.11: 20 residues within 4Å: Chain K: P.591, G.592, M.593, T.594, C.596, N.646, I.648, G.678, K.702, T.729, G.733, G.734, S.765, G.766, L.796, G.798, S.799, M.802, L.1050, A.1055 16 PLIP interactions: 16 interactions with chain K Hydrophobic interactions: K:M.593, K:L.1050, K:L.1050 Hydrogen bonds: K:G.592, K:T.594, K:N.646, K:K.702, K:K.702, K:K.702, K:T.729, K:G.734, K:G.734, K:G.766, K:G.798, K:S.799, K:S.799 FMN.12: 20 residues within 4Å: Chain L: P.591, G.592, M.593, T.594, C.596, N.646, I.648, G.678, K.702, T.729, G.733, G.734, S.765, G.766, L.796, G.798, S.799, M.802, L.1050, A.1055 16 PLIP interactions: 16 interactions with chain L Hydrophobic interactions: L:M.593, L:L.1050, L:L.1050 Hydrogen bonds: L:G.592, L:T.594, L:N.646, L:K.702, L:K.702, L:K.702, L:T.729, L:G.734, L:G.734, L:G.766, L:G.798, L:S.799, L:S.799

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, K. et al., Discovery of a Regulatory Subunit of the Yeast Fatty Acid Synthase. Cell (2020)

Release Date

2020-03-18

Peptides

Fatty acid synthase subunit alpha: ABCDEF
Fatty acid synthase subunit beta: GHIJKL
Translation machinery-associated protein 17: MNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

Fatty acid synthase subunit alpha

Fatty acid synthase subunit beta

Translation machinery-associated protein 17

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