SMTL ID : 6ta1.1

Fatty acid synthase of S. cerevisiae

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 31 residues within 4Å: Chain A: G.682, A.683, G.684, S.687, I.688, T.707, S.708, R.709, F.737, N.738, Q.739, G.740, F.771, A.772, A.773, I.774, F.790, I.794, M.795, P.825, M.826, S.827, Y.839, K.843, I.869, G.870, T.872, T.875, G.876, L.877, M.878 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.869 Hydrogen bonds: A:A.683, A:G.684, A:S.687, A:I.688, A:T.707, A:S.708, A:N.738, A:Q.739, A:A.773, A:Y.839, A:K.843, A:T.872, A:T.875, A:T.875, A:T.875, A:G.876 Salt bridges: A:R.709 NDP.3: 31 residues within 4Å: Chain C: G.682, A.683, G.684, S.687, I.688, T.707, S.708, R.709, F.737, N.738, Q.739, G.740, F.771, A.772, A.773, I.774, F.790, I.794, M.795, P.825, M.826, S.827, Y.839, K.843, I.869, G.870, T.872, T.875, G.876, L.877, M.878 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:I.869 Hydrogen bonds: C:A.683, C:G.684, C:S.687, C:I.688, C:T.707, C:S.708, C:N.738, C:Q.739, C:A.773, C:Y.839, C:K.843, C:T.872, C:T.875, C:T.875, C:T.875, C:G.876 Salt bridges: C:R.709 NDP.5: 31 residues within 4Å: Chain E: G.682, A.683, G.684, S.687, I.688, T.707, S.708, R.709, F.737, N.738, Q.739, G.740, F.771, A.772, A.773, I.774, F.790, I.794, M.795, P.825, M.826, S.827, Y.839, K.843, I.869, G.870, T.872, T.875, G.876, L.877, M.878 18 PLIP interactions: 18 interactions with chain E Hydrophobic interactions: E:I.869 Hydrogen bonds: E:A.683, E:G.684, E:S.687, E:I.688, E:T.707, E:S.708, E:N.738, E:Q.739, E:A.773, E:Y.839, E:K.843, E:T.872, E:T.875, E:T.875, E:T.875, E:G.876 Salt bridges: E:R.709 NDP.7: 31 residues within 4Å: Chain G: G.682, A.683, G.684, S.687, I.688, T.707, S.708, R.709, F.737, N.738, Q.739, G.740, F.771, A.772, A.773, I.774, F.790, I.794, M.795, P.825, M.826, S.827, Y.839, K.843, I.869, G.870, T.872, T.875, G.876, L.877, M.878 15 PLIP interactions: 15 interactions with chain G Hydrophobic interactions: G:I.869 Hydrogen bonds: G:A.683, G:G.684, G:S.687, G:I.688, G:S.708, G:N.738, G:Q.739, G:A.773, G:K.843, G:T.872, G:T.875, G:T.875, G:G.876 Salt bridges: G:R.709 NDP.9: 31 residues within 4Å: Chain I: G.682, A.683, G.684, S.687, I.688, T.707, S.708, R.709, F.737, N.738, Q.739, G.740, F.771, A.772, A.773, I.774, F.790, I.794, M.795, P.825, M.826, S.827, Y.839, K.843, I.869, G.870, T.872, T.875, G.876, L.877, M.878 15 PLIP interactions: 15 interactions with chain I Hydrophobic interactions: I:I.869 Hydrogen bonds: I:A.683, I:G.684, I:S.687, I:I.688, I:S.708, I:N.738, I:Q.739, I:A.773, I:K.843, I:T.872, I:T.875, I:T.875, I:G.876 Salt bridges: I:R.709 NDP.11: 31 residues within 4Å: Chain K: G.682, A.683, G.684, S.687, I.688, T.707, S.708, R.709, F.737, N.738, Q.739, G.740, F.771, A.772, A.773, I.774, F.790, I.794, M.795, P.825, M.826, S.827, Y.839, K.843, I.869, G.870, T.872, T.875, G.876, L.877, M.878 15 PLIP interactions: 15 interactions with chain K Hydrophobic interactions: K:I.869 Hydrogen bonds: K:A.683, K:G.684, K:S.687, K:I.688, K:S.708, K:N.738, K:Q.739, K:A.773, K:K.843, K:T.872, K:T.875, K:T.875, K:G.876 Salt bridges: K:R.709

6 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 22 residues within 4Å: Chain B: P.595, G.596, M.597, T.598, P.599, C.600, N.650, G.682, A.683, K.706, T.733, R.736, G.737, G.738, G.739, S.769, G.770, F.771, G.802, S.803, L.1054, A.1059 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:M.597, B:L.1054 Hydrogen bonds: B:G.596, B:T.598, B:N.650, B:A.683, B:T.733, B:G.738, B:G.738, B:S.769, B:G.770, B:F.771, B:G.802, B:S.803 FMN.4: 22 residues within 4Å: Chain D: P.595, G.596, M.597, T.598, P.599, C.600, N.650, G.682, A.683, K.706, T.733, R.736, G.737, G.738, G.739, S.769, G.770, F.771, G.802, S.803, L.1054, A.1059 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:M.597, D:L.1054 Hydrogen bonds: D:G.596, D:T.598, D:N.650, D:A.683, D:T.733, D:G.738, D:G.738, D:S.769, D:G.770, D:F.771, D:G.802, D:S.803 FMN.6: 22 residues within 4Å: Chain F: P.595, G.596, M.597, T.598, P.599, C.600, N.650, G.682, A.683, K.706, T.733, R.736, G.737, G.738, G.739, S.769, G.770, F.771, G.802, S.803, L.1054, A.1059 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:M.597, F:L.1054 Hydrogen bonds: F:G.596, F:T.598, F:N.650, F:A.683, F:T.733, F:G.738, F:G.738, F:S.769, F:G.770, F:F.771, F:G.802, F:S.803 FMN.8: 22 residues within 4Å: Chain H: P.595, G.596, M.597, T.598, P.599, C.600, N.650, G.682, A.683, K.706, T.733, R.736, G.737, G.738, G.739, S.769, G.770, F.771, G.802, S.803, L.1054, A.1059 13 PLIP interactions: 13 interactions with chain H Hydrophobic interactions: H:M.597, H:L.1054 Hydrogen bonds: H:G.596, H:T.598, H:N.650, H:A.683, H:G.738, H:G.738, H:S.769, H:G.770, H:F.771, H:G.802, H:S.803 FMN.10: 22 residues within 4Å: Chain J: P.595, G.596, M.597, T.598, P.599, C.600, N.650, G.682, A.683, K.706, T.733, R.736, G.737, G.738, G.739, S.769, G.770, F.771, G.802, S.803, L.1054, A.1059 13 PLIP interactions: 13 interactions with chain J Hydrophobic interactions: J:M.597, J:L.1054 Hydrogen bonds: J:G.596, J:T.598, J:N.650, J:A.683, J:G.738, J:G.738, J:S.769, J:G.770, J:F.771, J:G.802, J:S.803 FMN.12: 22 residues within 4Å: Chain L: P.595, G.596, M.597, T.598, P.599, C.600, N.650, G.682, A.683, K.706, T.733, R.736, G.737, G.738, G.739, S.769, G.770, F.771, G.802, S.803, L.1054, A.1059 13 PLIP interactions: 13 interactions with chain L Hydrophobic interactions: L:M.597, L:L.1054 Hydrogen bonds: L:G.596, L:T.598, L:N.650, L:A.683, L:G.738, L:G.738, L:S.769, L:G.770, L:F.771, L:G.802, L:S.803

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joppe, M. et al., The resolution revolution in cryoEM requires high-quality sample preparation: a rapid pipeline to a high-resolution map of yeast fatty acid synthase. Iucrj (2020)

Release Date

2019-11-06

Peptides

Fatty acid synthase subunit alpha: ACEGIK
Fatty acid synthase subunit beta: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
D

G
K

I
F

K
I

B
G

D
C

F
E

H
L

J
H

L
J

Fatty acid synthase subunit alpha

Fatty acid synthase subunit beta

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